CGST Act Section 49: Payment of tax, interest, penalty and other amounts | Finin2min
Section 49 - Payment of tax, interest, penalty and other amounts
Chapter X - Payment of Tax
ACTIVEOFFICIAL_TEXT_CAPTUREDindex,follow
Source control: The text/status on this page is tied to the official source gateway and the Phase 1 legal-review register.
Open official source.
Finin2min Summary - Section in 2 Minutes
Creates electronic cash, credit and liability ledgers and lays down payment, utilisation and discharge order.
Cash deposits can be made through prescribed modes and credited to the electronic cash ledger.
Credit ledger may be used only for output tax in the permitted order; it cannot pay interest, penalty,
late fee or RCM tax.
Liabilities are discharged in the order of prior-period self-assessed dues, current-period self-assessed
dues and other amounts.
Cash-ledger balances may be transferred between heads and, subject to conditions, between distinct
persons.
Exact operative text
49. Payment of tax, interest, penalty and other amounts.-(1) Every deposit made towards tax, interest,
penalty, fee or any other amount by a person by internet banking or by using credit or debit cards or National
Electronic Fund Transfer or Real Time Gross Settlement or by such other mode and subject to such
conditions and restrictions as may be prescribed, shall be credited to the electronic cash ledger of such
person to be maintained in such manner as may be prescribed.
(2) The input tax credit as self-assessed in the return of a registered person shall be credited to his
electronic credit ledger, in accordance with section 41 to be maintained in such manner as may be
prescribed.
(3) The amount available in the electronic cash ledger may be used for making any payment towards tax,
interest, penalty, fees or any other amount payable under the provisions of this Act or the rules made
thereunder in such manner and subject to such conditions and within such time as may be prescribed.
(4) The amount available in the electronic credit ledger may be used for making any payment towards output
tax under this Act or under the Integrated Goods and Services Tax Act in such manner and subject to such
conditions and restrictions and within such time as may be prescribed.
(5) The amount of input tax credit available in the electronic credit ledger of the registered person on account
of-
(a) integrated tax shall first be utilised towards payment of integrated tax and the amount remaining, if any,
may be utilised towards the payment of central tax and State tax, or as the case may be, Union territory tax,
in that order;
(b) the central tax shall first be utilised towards payment of central tax and the amount remaining, if any, may
be utilised towards the payment of integrated tax;
(c) the State tax shall first be utilised towards payment of State tax and the amount remaining, if any, may be
utilised towards payment of integrated tax;
Provided that the input tax credit on account of State tax shall be utilised towards payment of integrated tax
only where the balance of the input tax credit on account of central tax is not available for payment of
integrated tax;
(d) the Union territory tax shall first be utilised towards payment of Union territory tax and the amount
remaining, if any, may be utilised towards payment of integrated tax;
Provided that the input tax credit on account of Union territory tax shall be utilised towards payment of
integrated tax only where the balance of the input tax credit on account of central tax is not available for
payment of integrated tax;
(e) the central tax shall not be utilised towards payment of State tax or Union territory tax; and
(f) the State tax or Union territory tax shall not be utilised towards payment of central tax.
(6) The balance in the electronic cash ledger or electronic credit ledger after payment of tax, interest,
penalty, fee or any other amount payable under this Act or the rules made thereunder may be refunded in
accordance with the provisions of section 54.
(7) All liabilities of a taxable person under this Act shall be recorded and maintained in an electronic liability
register in such manner as may be prescribed.
(8) Every taxable person shall discharge his tax and other dues under this Act or the rules made thereunder
in the following order, namely:-
(a) self-assessed tax, and other dues related to returns of previous tax periods;
(b) self-assessed tax, and other dues related to the return of the current tax period;
(c) any other amount payable under this Act or the rules made thereunder including the demand determined
under section 73 or section 74 or section 74A.
(9) Every person who has paid the tax on goods or services or both under this Act shall, unless the contrary
is proved by him, be deemed to have passed on the full incidence of such tax to the recipient of such goods
or services or both.
Explanation.-For the purposes of this section,-
(a) the date of credit to the account of the Government in the authorised bank shall be deemed to be the
date of deposit in the electronic cash ledger;
(b) the expression,-
(i) “tax dues” means the tax payable under this Act and does not include interest, fee and penalty; and
(ii) “other dues” means interest, penalty, fee or any other amount payable under this Act or the rules made
thereunder. 1 2
(10) A registered person may, on the common portal, transfer any amount of tax, interest, penalty, fee or any
other amount available in the electronic cash ledger under this Act, to the electronic cash ledger for,-
(a) integrated tax, central tax, State tax, Union territory tax or cess; or
(b) integrated tax or central tax of a distinct person as specified in sub-section
(4) or, as the case may be, sub-section
(5) of section 25, in such form and manner and subject to such conditions and restrictions as may be
prescribed and such transfer shall be deemed to be a refund from the electronic cash ledger under this Act:
Provided that no such transfer under clause
(b) shall be allowed if the said registered person has any unpaid liability in his electronic liability register.
(11) Where any amount has been transferred to the electronic cash ledger under this Act, the same shall be
deemed to be deposited in the said ledger as provided in sub-section
(1).
(12) Notwithstanding anything contained in this Act, the Government may, on the recommendations of the
Council, subject to such conditions and restrictions, specify such maximum proportion of output tax liability
under this Act or under the Integrated Goods and Services Tax Act, 2017 (13 of 2017) which may be
discharged through the electronic credit ledger by a registered person or a class of registered persons, as
may be prescribed.
Paragraph-wise decode
Creates electronic cash, credit and liability ledgers and lays down payment, utilisation and discharge order. Cash deposits can be made through prescribed modes and credited to the electronic cash ledger. Credit ledger may be used only for output tax in the permitted order; it cannot pay interest, penalty, late fee or RCM tax. Liabilities are discharged in the order of prior-period self-assessed dues, current-period self-assessed dues and other amounts. Cash-ledger balances may be transferred between heads and, subject to conditions, between distinct persons.
Section-Rule-Form-Notification bridge
The mapping is a legal concordance, not a round-robin related-link list. It is limited to instruments certified in this phase.
Practical example
A taxpayer has IGST credit, CGST liability and interest. Credit can offset eligible output tax under the utilisation order; interest must be paid in cash.
Professional alert
A ledger balance is not a bank balance. Each transfer/use must be legally permitted and correctly mapped to tax head and GSTIN.
Implementation checklist
- Fix the transaction, taxable period and jurisdiction.
- Read every subsection, proviso, explanation and omission marker.
- Open the mapped Rule, form, notification and circular.
- Test State/UT variation and portal version.
- Preserve evidence, approvals, working papers and acknowledgements.
- Record the conclusion, assumptions, source date and reviewer.
Evidence and retention checklist
- Contract, purchase order, invoice or underlying transaction document.
- Registration, return, ledger, challan and portal acknowledgement.
- Official Act/Rule/notification version used and effective date.
- Internal tax position paper, computation and management approval.
- Correspondence, notices, replies, orders and appeal papers where applicable.
Practical Q&A
- What does section 49 regulate?
- It regulates payment of tax, interest, penalty and other amounts. Read the exact text, conditions, exceptions and transaction date together.
- Which subordinate law should be checked?
- Rule 85, Rule 86, Rule 86A, Rule 86B, Rule 87, Rule 88, Rule 88A, Rule 88B, Rule 88C, Rule 88D. Notifications, circulars, forms and the corresponding SGST/UTGST layer may also apply.
- What evidence should be retained?
- Preserve the contract or transaction record, invoice or form, portal acknowledgement, payment/ledger evidence, correspondence, legal working and the official source version used.
- Can portal behaviour override the statute?
- No. Portal functionality is operational evidence; legal entitlement and liability remain controlled by the Act, Rules, notifications and binding decisions.